perform_permanova: Perform PERMANOVA

In antonvsdata/notame: Workflow for non-targeted LC-MS metabolic profiling

Perform PERMANOVA

Description

Performs permutational multivariate analysis of variance. Uses package called PERMANOVA.

Usage

perform_permanova(
  object,
  group,
  all_features = FALSE,
  transform = "Standardize columns",
  coef = "Pythagorean",
  ...
)

Arguments

object	a MetaboSet object
group	character, name of the column to compare
all_features	should all features be included?
transform	Transformation to use in IniTransform. By default uses "Standardize columns".
coef	Coefficient to calculate continuous distances in DistContinuous. By default uses Pythagorean distances.
...	other parameters to PERMANOVA

Value

PERMANOVA object

Examples

permanova_res <- perform_permanova(drop_qcs(example_set), group = "Group")

antonvsdata/notame documentation built on Sept. 14, 2024, 11:09 p.m.