plot_sample_suprahex: Suprahex plots

In antonvsdata/notame: Workflow for non-targeted LC-MS metabolic profiling

Suprahex plots

Description

Plots supraHex plots of each sample using functions from the supraHex package. See the supraHex paper and package vignette for more information.

Usage

plot_sample_suprahex(
  object,
  all_features = FALSE,
  sample_labels = "Sample_ID",
  grid_xdim = NULL,
  grid_ydim = NULL,
  title.xy = c(0.35, 1),
  title.rotate = 0,
  fontsize = 10,
  colormap = "jet",
  ...
)

Arguments

object	a MetaboSet object
all_features	if FALSE, flagged features are droppped
sample_labels	the column for labels of samples in the plot
grid_xdim, grid_ydim	dimensions of the grid for the samples
title.xy	position of the sample label relative to the supraHex
title.rotate	rotation of the sample label in degrees
fontsize	the fontsize for sample labels
colormap	colormap for the hexagons
...	other parameters for supraHex::sPipeline

See Also

sPipeline, sCompReorder, visCompReorder

Examples

## Not run: 
plot_sample_suprahex(merged_sample[, 1:20],
  xdim = 5, title.xy = c(0.35, 1),
  grid_xdim = 7, grid_ydim = 7, sample_labels = "Group"
)

## End(Not run)

antonvsdata/notame documentation built on Sept. 14, 2024, 11:09 p.m.