visualize_clusters: Visualize clusters of features

In antonvsdata/notame: Workflow for non-targeted LC-MS metabolic profiling

Visualize clusters of features

Description

Draws multiple visualizations of each cluster, creating a separate file for each cluster.

Usage

visualize_clusters(
  data,
  features,
  clusters,
  min_size,
  rt_window,
  name_col,
  mz_col,
  rt_col,
  file_path
)

Arguments

data	data frame with the abundances of features, with features as columns
features	data frame with feature information, fData(object)
clusters	a list of clusters as returned by find_clusters
min_size	the minimum number of features a cluster needs to have to be plotted
rt_window	numeric, the retention time window to use in linking features. NOTE you need to use the same unit as in the retention time column
name_col	character, name of the column in features that contains feature names
mz_col	character, name of the column in features that contains mass-to-charge ratios
rt_col	character, name of the column in features that contains retention times
file_path	the prefix to the files to be plotted

antonvsdata/notame documentation built on Sept. 14, 2024, 11:09 p.m.