documentation/depth_filt.md

In anttonalberdi/hilldiv: Integral Analysis of Diversity Based on Hill Numbers

depth_filt()

Last update: hilldiv 1.5.0

Filter samples based on a minimum sequencing depth.

Arguments

| Arguments | Description | | ------------- | ------------- | | countable | A count table (matrix/data.frame) indicating the absolute OTU/ASV abundances of multiple samples. Columns must refer to samples and rows to OTUs/ASVs. | threshold | A number indicating the minimum sequencing depth required to keep the sample. |

Examples

data(bat.diet.otutable)

depth_filt(bat.diet.otutable,5000)
depth_filt(bat.diet.otutable,threshold=20000)

anttonalberdi/hilldiv documentation built on Feb. 14, 2021, 5:08 p.m.