documentation/match_data.md

In anttonalberdi/hilldiv: Integral Analysis of Diversity Based on Hill Numbers

match_data()

Last update: hilldiv 1.5.0

Auxiliary function to match OTUs present in count tables and OTU/ASV phylogenetic trees and ensure phylogenetic Hill numbers are correctly computed.

Arguments

| Arguments | Description | | ------------- | ------------- | | countable | A count table (matrix/data.frame) indicating the absolute or relative OTU/ASV abundances of multiple samples. Columns must refer to samples and rows to OTUs/ASVs. | | tree | An ultrametic tree of class 'phylo'. | | output | Whether to output a filtered OTU table (matrix) or a filtered OTU tree (phylo). |

Examples

data(bat.diet.otutable)
data(bat.diet.tree)
match_data(bat.diet.otutable,bat.diet.tree,output="countable")
match_data(bat.diet.otutable,bat.diet.tree,output="tree")

anttonalberdi/hilldiv documentation built on Feb. 14, 2021, 5:08 p.m.