documentation/tree_depth.md

In anttonalberdi/hilldiv: Integral Analysis of Diversity Based on Hill Numbers

tree_depth()

Computes phylogenetic tree depth based from a phylogenetic tree and a vector of (relative) abundances.

Arguments

| Arguments | Description | | ------------- | ------------- | | tree | A phylogenetic tree of class 'phylo'. The tip labels must match the row names in the OTU table. Use the function match.data() if the OTU names do not match. | | abund | A vector or a matrix/data.frame indicating the relative abundances of one or multiple samples, respectively. If a matrix/data.frame is provided, columns must refer to samples and rows to OTUs. |

Examples

data(bat.diet.otutable)
data(bat.diet.tree)

tree_depth(tree=bat.diet.tree,abund=bat.diet.otutable)
tree_depth(bat.diet.tree,bat.diet.otutable)

anttonalberdi/hilldiv documentation built on Feb. 14, 2021, 5:08 p.m.