mockFile: Generate Test Images

In aoles/RBioFormats: R interface to Bio-Formats

Generate Test Images

Description

Create a mock image of specific parameters for testing.

Usage

mockFile(name = "mockfile", ...)

Arguments

name	File name.
...	File parameters; available parameters are listed below.

Details

Generates mock files of specific size or pixel type containing gradient images. The desired parameters can be provided as key value pairs to the mockFile function. For a list of available parameters see below.

Value

A character string.

Parameters

Name	Default	Description
sizeX	512	horizontal size in pixels
sizeY	512	vertical size in pixels
sizeZ	1	number of Z sections
sizeC	1	number of channels
sizeT	1	number of time points
pixelType	uint8	string specifying pixel type: int8, uint8, int16, uint16, int32, uint32, float, double
bitsPerPixel	0	number of valid bits (<= number of bits implied by pixel type)
rgb	1	number of channels that are merged together
dimOrder	XYZCT	string describing dimension order
orderCertain	true
little	true	whether or not the pixel data should be little-endian
interleaved	true	whether or not merged channels are interleaved
indexed	false	whether or not a color lookup table is present
falseColor	false	whether or not the color lookup table is just for making the image look pretty
series	1	number of series (Images)
lutLength	3	number of entries in the color lookup table

Author(s)

Andrzej Oleś <[e-mail]>, 2014-2023

Examples

f = mockFile(sizeX = 256, sizeY = 256)
img = read.image(f)
img

aoles/RBioFormats documentation built on May 3, 2024, 7:46 a.m.