read.omexml: Read OME-XML Metadata

In aoles/RBioFormats: R interface to Bio-Formats

Read OME-XML Metadata

Description

Read the OME-XML DOM tree.

Usage

read.omexml(file, filter.metadata = FALSE, proprietary.metadata = TRUE)

Arguments

file	character, file name
filter.metadata	logical, specifies whether ugly metadata (entries with unprintable characters, and extremely large entries) should be discarded from the metadata table
proprietary.metadata	logical, should proprietary metadata be populated to OME-XML

Value

A string containing a dumped OME-XML DOM tree.

Author(s)

Andrzej Oleś <[e-mail]>, 2014-2023

See Also

read.metadata for reading image metadata, read.image for reading image data

Examples

require(EBImage)
f = system.file("images", "nuclei.tif", package="EBImage")

omexml = read.omexml(f)
omexml

aoles/RBioFormats documentation built on May 3, 2024, 7:46 a.m.