Man pages for aphanotus/borealis
Tools for reproducible geometric morphometric analysis
| add.provenance | Add data provenance to a list |
| adonis.aic | Generalized AIC for adonis models |
| align.angle | Align a subset of landmarks by rotation from one point |
| align.bilat | Align landmarks across a line of symmetry |
| align.extension | Align a subset of landmarks by linear extension |
| align.procrustes | Generalized Procrustes alignment with interactive outlier... |
| align.reflect | Consistently orient specimens in an array of coordinate shape... |
| Arey301A.scope | Pixel-to-metric distance conversions for the dissecting scope... |
| Bombus.forewings | Bumblebee forewing shape data |
| Bombus.tree | A phylogeny of bumblebee species |
| centroid.scaled.distances | Calculate the matrix of distances between shape coordinates,... |
| create.tps | Convert landmark data from xlsx or csv to tps format |
| distance | Euclidean distance between points in 2D space |
| East1916 | Quantative Genetics Data from East 1916 |
| East1916.wide | Quantative Genetics Data from East 1916 |
| estimate.missing.landmarks | Estimate the location of missing landmarks |
| filter.shapes | Filter landmark coordinate shape data via a factor |
| ggGMMplot | Morphospace in the ggplot style |
| gg.shape.space | Shape space in the ggplot style |
| Jadera | Shape data from _Jadera haematoloma_ |
| JaderaRNAi | Shape data from _Jadera haematoloma_ RNAi specimens |
| landmark.plot | Plot the relative position of landmarks |
| listed.gdf | Converts list elements gpagen and metadata into a geomorph... |
| mantis | Simulated dataset of Mantis forelimb shapes |
| pairs | Scatterplot Matrices |
| pcvar | Proportional Variance from Principal Components |
| phy.names | Add information to the names in a phylip alignment file |
| procrustes.distance | Procrustes distance between shapes |
| procrustes.jackknife | Examine the influence of each landmark in Procrustes... |
| qPCR.plot | Plot raw qPCR data |
| read.mmm | Read in and convert linear multivariate morphometric data |
| read.tps | Read shape data from a TPS file |
| rmd.anova.table | Format anova output for R markdown |
| scaling.plot | Scaling plots in the ggplot style |
| scree.plot | Plot the proportion of variance captured by each component... |
| shape.space | Shape space in the ggplot style |
| subsetgmm | Subset a geometric morphometric shape dataset |
| subset.gmm | Subset a geometric morphometric shape dataset |
| write.provenance | Write data provenance to a file |
