Man pages for aphanotus/borealis
Tools for reproducible geometric morphometric analysis

add.provenanceAdd data provenance to a list
adonis.aicGeneralized AIC for adonis models
align.angleAlign a subset of landmarks by rotation from one point
align.bilatAlign landmarks across a line of symmetry
align.extensionAlign a subset of landmarks by linear extension
align.procrustesGeneralized Procrustes alignment with interactive outlier...
align.reflectConsistently orient specimens in an array of coordinate shape...
Arey301A.scopePixel-to-metric distance conversions for the dissecting scope...
Bombus.forewingsBumblebee forewing shape data
Bombus.treeA phylogeny of bumblebee species
centroid.scaled.distancesCalculate the matrix of distances between shape coordinates,...
create.tpsConvert landmark data from xlsx or csv to tps format
distanceEuclidean distance between points in 2D space
East1916Quantative Genetics Data from East 1916
East1916.wideQuantative Genetics Data from East 1916
estimate.missing.landmarksEstimate the location of missing landmarks
filter.shapesFilter landmark coordinate shape data via a factor
ggGMMplotMorphospace in the ggplot style
gg.shape.spaceShape space in the ggplot style
JaderaShape data from _Jadera haematoloma_
JaderaRNAiShape data from _Jadera haematoloma_ RNAi specimens
landmark.plotPlot the relative position of landmarks
listed.gdfConverts list elements gpagen and metadata into a geomorph...
mantisSimulated dataset of Mantis forelimb shapes
pairsScatterplot Matrices
pcvarProportional Variance from Principal Components
phy.namesAdd information to the names in a phylip alignment file
procrustes.distanceProcrustes distance between shapes
procrustes.jackknifeExamine the influence of each landmark in Procrustes...
qPCR.plotPlot raw qPCR data
read.mmmRead in and convert linear multivariate morphometric data
read.tpsRead shape data from a TPS file
rmd.anova.tableFormat anova output for R markdown
scaling.plotScaling plots in the ggplot style
scree.plotPlot the proportion of variance captured by each component...
shape.spaceShape space in the ggplot style
subsetgmmSubset a geometric morphometric shape dataset
subset.gmmSubset a geometric morphometric shape dataset
write.provenanceWrite data provenance to a file
aphanotus/borealis documentation built on Nov. 4, 2022, 8:44 p.m.