Jadera | R Documentation |
Coordinate shape data from the dorsal side of red-shouldered soapberry bugs, Jadera haematoloma.
Jadera
An object of class list
of length 6.
coords
An array of XY coordinates for the shape of multiple specimens (42 landmarks by 2 (XY) by 189 specimens).
landmark.number
The number of landmarks in the shape data.
specimen.number
The number of specimens in the shape data.
metadata
A data frame of metadata.
provenance
Data provenance.
Metadata includes the following
id
An ID name for each specimen, which combines a unique identifer with the morph, sex and digitizer.
pop
The population of origin. SP
= Silver Palm Dr, Miami, FL. KL
= Key Largo, FL. LE
= Leesburg, FL. AC
= Aurora, CO. FR
= Frederick, MD PK
= Plantation Key, FL.
hostplant
The host plant bugs were collected from in the wild, or reared on in the lab. GRT
= goldenrain tree, Koelreuteria sp. BV
= balloon vine, Cardiospermum corindum.
seeds
The number of seeds caged with the cohort during the bug's rearing. (Only available for lab-raised bugs.)
cohort
The number of conspecifics present in the cohort during the bug's rearing. (Only available for lab-raised bugs.)
rearing
Whether the bug was caught in the wild or reared in the lab.
morph
Whether the bug was classified as long winged (LW) oir short-winged (SW).
sex
Whether the bug is female (f) or male (m).
digitizer
The initials of the person who did the landmark digitization.
bodylength
The length of the body, from clypeus to terminalia, measured from the ventral side (mm).
beak
The length of the beak (also called the rostrum or labium), from anterior of the clypeus to its distal tip (mm).
labrum
The length of the labrum, from anterior of the clypeus to its distal tip (mm).
antenna
The mean length of the antennae (mm).
femur1
The mean length of the femur of the first legs (mm).
femur2
The mean length of the femur of the second legs (mm).
femur3
The mean length of the femur of the third legs (mm).
Dave Angelini david.r.angelini@gmail.com [aut, cre]
Fawcett, M.M., Parks, M.C., Tibbetts, A.E., Swart, J.S., Richards, E.M., Vanegas, J.C., Cenzer, M., Crowley, L., Simmons, W.R., Hou, W.S., Angelini, D.R. (2018). Manipulation of insulin signaling phenocopies evolution of a host-associated polyphenism. Nature Communications 9: 1699. https://doi.org/10.1038/s41467-018-04102-1
# Load the dataset data("Jadera", package = "borealis") # Define connecting lines { x <- 1:9 jhae.lines <- matrix(c(x[-length(x)], x[length(x)], x[-1], x[1]), ncol = 2) x <- c(10,11,17,16,15,12,13,14) jhae.lines <- rbind(jhae.lines, matrix(c(x[-length(x)], x[length(x)], x[-1], x[1]), ncol = 2) ) x <- c(17,18,15,16) jhae.lines <- rbind(jhae.lines, matrix(c(x[-length(x)], x[length(x)], x[-1], x[1]), ncol = 2) ) x <- c(19,21,22,20,26,25,32:34,31,35:39,29,40:42) jhae.lines <- rbind(jhae.lines, matrix(c(x[-length(x)], x[length(x)], x[-1], x[1]), ncol = 2) ) x <- c(19,23, 23,24, 23,28, 28,29, 19,24, 24,27, 27,28, 19,25, 27,30) jhae.lines <- rbind(jhae.lines, matrix(x, ncol = 2, byrow = TRUE) ) x <- c(1,3, 7,9, 14,16, 16,18) jhae.lines <- rbind(jhae.lines, matrix(x, ncol = 2, byrow = TRUE) ) } landmark.plot(Jadera, links = jhae.lines) landmark.plot(Jadera, links = jhae.lines, specimen.number = c(23,24,31,33))
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