knitAPS: Render an AnalysisPageServer Rmd report to HTML using knitr

In apomatix/AnalysisPageServer: A framework for sharing interactive data and plots from R through the web

Description

This doesn't do much more than just call knitr, but it first has a bit of logic to overwrite or not the target directory. AnalysisPageServer reports are entire directories, so this is convenient to manage the creation of the report at that level.

Usage

knitAPS(template.Rmd, outdir = dirname(outfile), outfile = file.path(outdir,
  sub(".Rmd", ".html", basename(template.Rmd))), e = new.env(),
  overwrite = FALSE, ...)

Arguments

template.Rmd	Path to .Rmd template
outdir	Path to output directory. Default: dirname(outfile). You must specify either this or outfile.
outfile	Path to output main .html file. Default is to use basename(template.Rmd) with an .html extension, and put it in the outdir directory. You must specify either outdir or this.
e	Environment to pass to knitr. Default: new.env()
overwrite	Logical, default FALSE. This controls the behavior If outdir already exists. In that case, if overwrite is TRUE then the outdir is first removed. If overwrite is FALSE then instead an error is thrown.
...	Passed through to knit2html()

Value

Path to filename written (that is, outfile).

Author(s)

Brad Friedman

apomatix/AnalysisPageServer documentation built on May 26, 2019, 11:36 a.m.