Man pages for aquaMetrics/fcs2
Fisheries Classification Scheme 2 For SNIFFER

abundance	Posterior Samples of Abundance and Prevalence Model...
as.array	Convert EQR object to array
calcClassScot	Calculate Classification Results for Scotland
combineBUGSFits	Combine BUGS fits
dCatch	Probabilities of the total catch distribution
demo_data	Demo data
demo_results	Demo result data
dot-fcs2SetDefaultPriors	Set Default Priors
fcs2Classify	Probabilistic WFD Classifications from EQR Samples
fcs2EQRSummaryMatrix	EQR Summary Matrix
fcs2FitModel	Fit the FCS2 Statistical Model
fcs2InteractiveLikelihood	Interactive FCS2 model likelihood
fcs2InteractivePrediction	Interactive FCS2 model prediction
fcs2JointAndSingleEQR	Joint And Single EQR
fcs2JointEQR	Joint EQR
fcs2ModelSelection	Automated Model Selection
fcs2-package	Fisheries Classification Scheme 2 For SNIFFER
fcs2Priors	Prior Distributions in the FCS2 Model
fcs2RunINLA	Fit Approximate FCS2 Models with INLA
fcs2SingleEQR	Single EQR
fcs2SpatialSummary	Summary of Spatial Terms in FCS2 Model
fcs2WriteModel	Write BUGS Model File
hyperprior	The Hyperprior Distribution
logit	The Logit Function
mean	Mean EQR
na.action.fcs2EQR	Missing Values in EQR Samples
na.action.fcs2Fit	Missing Values in FCS2 Model Fit
plotBUGSTrace	Trace Plots of MCMC Chains from BUGS
plotCatchPMF	Plot Probability Mass Function of Predicted Total Catch
plot.fcs2EQR	Plot EQR Samples
plot.fcs2Fit	Plot FCS2 Model Fit
plotSpatialTerm	Plot Spatial Term
ppplot	Probability-Probability Plot of FCS2 Model Fit
predict.fcs2Fit	Predicted Total Catch
print.fcs2EQR	Printing EQR Samples
print.fcs2Fit	Printing an FCS2 Model Fit
quantile	Quantiles of an EQR Sample
specialTerms	Special Non-Linear Terms for FCS2 Abundance and Prevalence...
summary.fcs2EQR	Detailed EQR summary
summary.fcs2Fit	Detailed summary
thinBUGSSamples	Thin BUGS Samples
variable.names	Variable Names in FCS2 Model
zinbinom	Zero-inflated Negative Binomial Distributions.
zinmultinom	Zero-inflated Negative Multinomial Distributions.