API for aquaflakes/fjComm
What the Package Does in One 'Title Case' Line
| Global functions | |
|---|---|
| .encode | Source code |
| .onLoad | Source code |
| .seed_encode | Source code |
| CN_sources | Source code |
| IUPAC_to_di_nt_regex | Source code |
| NN_PWM_default_train | Source code |
| NN_PWM_model_gen | Source code |
| SELEXFile | Source code |
| TF_classify | Source code |
| TF_color_acc_family | Source code |
| TF_std_name | Source code |
| addColtoGuide | Source code |
| addFeatures | Source code |
| add_file_col | Source code |
| add_well | Source code |
| add_well_rm_suff | Source code |
| adda | Man page Source code |
| align_AA | Source code |
| align_AA_DBD | Source code |
| align_AA_UniprotID | Source code |
| analyse | Source code |
| analyze | Source code |
| assign_k_to_PWMs | Source code |
| bedFile | Source code |
| biomart_info_from_id | Source code |
| calc_Vplot | Source code |
| createDummy | Source code |
| detach_package | Source code |
| dfReadFileFun | Source code |
| dfSaveFun | Source code |
| di_nt_to_IUPAC | Source code |
| excel_vect_to_384 | Source code |
| extendToMatch | Source code |
| extract_TF | Source code |
| extract_batch | Source code |
| extract_cyc | Source code |
| extract_well | Source code |
| fast_factor | Source code |
| fft_raw | Source code |
| fft_snRatio_phase | Source code |
| fft_snRatio_phase_bl_sub | Source code |
| fjComm | Man page |
| fjComm-package | Man page |
| fw_rev_dedup | Source code |
| gen_384_label | Source code |
| gen_96_label | Source code |
| getChrScore | Source code |
| getChrScore_scored_k | Source code |
| getChrScores_scored_k | Source code |
| getMotif | Source code |
| getSeq_fqfachrFile | Source code |
| get_scriptpath | Source code |
| gg_2Dheat_dotly | Source code |
| gg_PCA_2Dplot | Source code |
| gg_axis_x_noExp | Source code |
| gg_axis_y_noExp | Source code |
| gg_bkcolor | Source code |
| gg_distMDS_2Dplot | Source code |
| gg_heat2D_MI | Source code |
| gg_heat2D_MI_rotate | Source code |
| gg_hist | Source code |
| gg_histly | Source code |
| gg_scale_colour_Publication | Source code |
| gg_scale_fill_Publication | Source code |
| gg_to_polar | Source code |
| ggseqlogo_lab | Source code |
| ggseqlogo_lab_list | Source code |
| gkmerCntBit | Source code |
| gkmerCntBit_file | Source code |
| gkmerCntBit_rc | Source code |
| gkmer_enrich | Source code |
| grange_PE2SR_withsize | Source code |
| groupAssign | Source code |
| guide.get_Info_by_well | Source code |
| hello | Man page |
| hudd_kmer_gen | Source code |
| ic_get_2vect_cnt_table | Source code |
| kmerCnt | Source code |
| kmerCntBit | Source code |
| kmerCntBit_file | Source code |
| kmerCntBit_rc | Source code |
| kmerCnt_allgap | Source code |
| kmerCnt_allgap_file | Source code |
| kmer_pfm_score | Source code |
| kmer_pwm_score | Source code |
| kmer_table_JustReads | Source code |
| knit_oneOff_source | Source code |
| lamda_calc | Source code |
| largeListToDf | Source code |
| len4_vect_IC | Source code |
| length_adjust | Source code |
| letter2num | Source code |
| local_max_file | Source code |
| local_max_gkdf | Source code |
| matRevComp | Source code |
| math_get_baseline | Source code |
| math_sub_baseline | Source code |
| mclapply | Source code |
| motif_getpfm_from_TFname | Source code |
| motif_plot_moods_singlePWM_hit | Source code |
| mutate_cond | Source code |
| namedVect_to_df | Source code |
| num2letter | Source code |
| nusel_binders | Source code |
| nusel_get_147 | Source code |
| nusel_get_200 | Source code |
| oneOffCalc | Source code |
| parallel | Source code |
| parallel_cmd_gen | Source code |
| pfm_bk_corr_lamda | Source code |
| pfm_correct_direction | Source code |
| pfm_from_seed | Source code |
| pfm_from_seed_R | Source code |
| pfm_from_seed_element | Source code |
| pfm_from_seed_notUsed | Source code |
| plotCircle | Source code |
| plotMotif_all_tops_by_TFname | Source code |
| plotMotif_pfmFile | Source code |
| plotMotif_pfmMat | Source code |
| qPCR.getData | Source code |
| qPCR.get_d2max | Source code |
| qw | Source code |
| range_breaks | Source code Source code |
| rcpp_hello_world | Man page |
| readClipBoard | Source code |
| recoverDf_from_return_list | Source code |
| revComp | Source code Source code |
| rm_suffix | Source code |
| rmdup | Source code |
| rmdup_headtail | Source code |
| save_df_to_file | Source code |
| save_gg | Source code |
| scale_x_tufte | Source code |
| scale_y_tufte | Source code |
| score_genome_gkmers_cpp | Source code |
| score_genome_gkmers_parallel | Source code |
| score_with_mono_di_pwm | Source code |
| scoring | Source code |
| semper | Source code |
| semper2 | Source code |
| seqFile | Source code |
| seqFregments | Source code |
| seq_dimer_sig_gen | Source code |
| seq_gen_rnd | Source code |
| seq_rnd_substitute | Source code |
| squishQuan_normalize | Source code |
| sr_dup_rate | Source code |
| stock_indices_plot | Source code |
| stopQuietly | Source code |
| top_n_models | Source code |
| tufte_x_axis | Source code |
| tufte_y_axis | Source code |
| win_Welch_coeff | Source code |
| writeClipboard | Source code |
| xyplot | Source code |
| xyplot_RDSs | Source code |
| xyplot_gklm | Source code |
