API for aquaflakes/fjComm
What the Package Does in One 'Title Case' Line

Global functions
.encode Source code
.onLoad Source code
.seed_encode Source code
IUPAC_to_di_nt_regex Source code
NN_PWM_default_train Source code
NN_PWM_model_gen Source code
SELEXFile Source code
TF_classify Source code
TF_color_acc_family Source code
TF_std_name Source code
addColtoGuide Source code
addFeatures Source code
add_file_col Source code
add_well Source code
add_well_rm_suff Source code
adda Man page Source code
align_AA_DBD Source code
analyse Source code
analyze Source code
assign_k_to_PWMs Source code
bedFile Source code
biomart_info_from_id Source code
calc_Vplot Source code
createDummy Source code
detach_package Source code
dfReadFileFun Source code
dfSaveFun Source code
di_nt_to_IUPAC Source code
excel_vect_to_384 Source code
extendToMatch Source code
extract_TF Source code
extract_batch Source code
extract_cyc Source code
extract_well Source code
fast_factor Source code
fft_raw Source code
fft_snRatio_phase Source code
fft_snRatio_phase_bl_sub Source code
fjComm Man page
fjComm-package Man page
fw_rev_dedup Source code
gen_384_label Source code
gen_96_label Source code
getChrScore Source code
getChrScore_scored_k Source code
getMotif Source code
get_scriptpath Source code
gg_2Dheat_dotly Source code
gg_PCA_2Dplot Source code
gg_axis_x_noExp Source code
gg_axis_y_noExp Source code
gg_bkcolor Source code
gg_distMDS_2Dplot Source code
gg_heat2D_MI Source code
gg_heat2D_MI_rotate Source code
gg_hist Source code
gg_histly Source code
gg_scale_colour_Publication Source code
gg_scale_fill_Publication Source code
gg_theme_Publication Source code
gg_to_polar Source code
ggseqlogo_lab Source code
ggseqlogo_lab_list Source code
gkmerCntBit Source code
gkmerCntBit_file Source code
grange_PE2SR_withsize Source code
groupAssign Source code
guide.get_Info_by_well Source code
hello Man page
hudd_kmer_gen Source code
ic_get_2vect_cnt_table Source code
kmerCnt Source code
kmerCntBit Source code
kmerCntBit_file Source code
kmerCnt_allgap Source code
kmerCnt_allgap_file Source code
kmer_pfm_score Source code
kmer_pwm_score Source code
kmer_table_JustReads Source code
knit_oneOff_source Source code
lamda_calc Source code
largeListToDf Source code
len4_vect_IC Source code
letter2num Source code
local_max_file Source code
local_max_gkdf Source code
matRevComp Source code
math_get_baseline Source code
math_sub_baseline Source code
motif_getpfm_from_TFname Source code
motif_plot_moods_singlePWM_hit Source code
mutate_cond Source code
namedVect_to_df Source code
num2letter Source code
nusel_binders Source code
nusel_get_147 Source code
nusel_get_200 Source code
oneOffCalc Source code
parallel Source code
pfm_bk_corr_lamda Source code
pfm_correct_direction Source code
pfm_from_seed Source code
pfm_from_seed_R Source code
pfm_from_seed_element Source code
pfm_from_seed_notUsed Source code
plotCircle Source code
plotMotif_all_tops_by_TFname Source code
plotMotif_pfmFile Source code
plotMotif_pfmMat Source code
qPCR.getData Source code
qPCR.get_d2max Source code
qw Source code
range_breaks Source code Source code
rcpp_hello_world Man page
readClipBoard Source code
recoverDf_from_return_list Source code
revComp Source code Source code
rm_suffix Source code
rmdup Source code
save_df_to_file Source code
save_gg Source code
scale_x_tufte Source code
scale_y_tufte Source code
score_with_mono_di_pwm Source code
scoring Source code
semper Source code
semper2 Source code
seqFile Source code
seqFregments Source code
seq_dimer_sig_gen Source code
seq_gen_rnd Source code
seq_rnd_substitute Source code
squishQuan_normalize Source code
sr_dup_rate Source code
stopQuietly Source code
top_n_models Source code
tufte_x_axis Source code
tufte_y_axis Source code
win_Welch_coeff Source code
writeClipboard Source code
xyplot Source code
xyplot_RDSs Source code
xyplot_gklm Source code
aquaflakes/fjComm documentation built on Nov. 6, 2019, 1:04 p.m.