Files in aquaflakes/fjComm
What the Package Does in One 'Title Case' Line
.DS_Store
.Rbuildignore
._DESCRIPTION
._NAMESPACE
._Read-and-delete-me
._Readme.Rmd
._fjComm-package.Rd
._fjComm.Rproj
.gitignore
.project
.settings/._de.walware.statet.r.core.prefs
.settings/de.walware.statet.r.core.prefs
DESCRIPTION
NAMESPACE
R/._Math.html
R/2017_03_20_ggplot_predifined.R
R/2017_03_20_seq_alignment.R
R/2017_04_20_parallel.R
R/2017_04_27_SELEX_utilities.R
R/2017_05_04_motif_related.R
R/2017_05_04_motif_related_Rver.R
R/2017_05_04_motif_related_plot.R
R/2017_05_FT_related.R
R/2017_06_19_Nu_manuscript.R
R/2018_01_gRange_utilities.R
R/2019_04_05_ggplot_predifined2.R
R/2019_04_SELEX_dbop.R
R/2019_05_SELEX_localMax.R
R/2019_05_SELEX_topModes.R
R/2019_07_12_knit_funs.R
R/2019_09_ShortRead_op.R
R/2019_09_biomart.R
R/2019_10_NN_energy.R
R/2020_07_stock_utils.R
R/2021_05_diff_length_ligands.R
R/IC_related.R
R/Math.R
R/Math.html
R/R_utility.R
R/RcppExports.R
R/TF_related.R
R/_TESTER.R
R/__roxygen_template.R
R/circular.R
R/class_seqFile.R
R/class_seqFile_SELEXFile.R
R/class_seqFile_bedFile.R
R/commRDatafun.R
R/commRfun.R
R/custom_op.R
R/excel_utility.R
R/fileIO.R
R/ggplot2_theme_and_basic.R
R/guideFile.R
R/not_yet_used/._FPK-V13-13 (Analysis).R
R/not_yet_used/._gg_scale_range.R
R/not_yet_used/._kcnt_wrapper.R
R/not_yet_used/FPK-V13-13 (Analysis).R
R/not_yet_used/gg_scale_range.R
R/not_yet_used/kcnt_wrapper.R
R/qPCR.R
R/sequence_op.R
R/tmpFasta.R
R/useful_fragments/._biomart.R
R/useful_fragments/biomart.R
R/zzz.R
Read-and-delete-me
Readme.Rmd
_otherScripts/._maxBiasPair_allpos.R
_otherScripts/maxBiasPair_allpos.R
_src_oldver/._armatest.cpp
_src_oldver/._kcnt_bit_o.cpp
_src_oldver/._kcnt_bit_v1.cpp
_src_oldver/._kcnt_bit_v2_arma.cpp
_src_oldver/armatest.cpp
_src_oldver/kcnt_bit_o.cpp
_src_oldver/kcnt_bit_v1.cpp
_src_oldver/kcnt_bit_v2_arma.cpp
extdata/._NC_001422.1.fa
extdata/._NC_001422.1.fa.fai
extdata/._NC_001422.1.fa.md5
extdata/._auxiliaries.txt
extdata/._bis_1_1.fa.bz2
extdata/._chip_1_1.fq.bz2
extdata/._chip_1_1_ca65174b9c7.bam
extdata/._chip_1_1_ca65174b9c7.bam.bai
extdata/._chip_1_1_ca65174b9c7.bam.txt
extdata/._chip_1_1_d6c52b86d58.bam
extdata/._chip_1_1_d6c52b86d58.bam.bai
extdata/._chip_1_1_d6c52b86d58.bam.txt
extdata/._chip_1_1_d6c7034d4fa.bam
extdata/._chip_1_1_d6c7034d4fa.bam.bai
extdata/._chip_1_1_d6c7034d4fa.bam.txt
extdata/._chip_2_1.fq.bz2
extdata/._chip_2_1_ca64650e198.bam
extdata/._chip_2_1_ca64650e198.bam.bai
extdata/._chip_2_1_ca64650e198.bam.txt
extdata/._chip_2_1_d6c1c8aa2a3.bam
extdata/._chip_2_1_d6c1c8aa2a3.bam.bai
extdata/._chip_2_1_d6c1c8aa2a3.bam.txt
extdata/._chip_2_1_d6c4a12d6d5.bam
extdata/._chip_2_1_d6c4a12d6d5.bam.bai
extdata/._chip_2_1_d6c4a12d6d5.bam.txt
extdata/._hg19sub.fa
extdata/._hg19sub.fa.fai
extdata/._hg19sub.fa.md5
extdata/._hg19sub_annotation.gtf
extdata/._hg19sub_snp.txt
extdata/._mirbaseXX_qsr.gff3
extdata/._mirna_1.fa
extdata/._phiX_paired_withSecondary.bam
extdata/._phiX_paired_withSecondary.bam.bai
extdata/._phiX_paired_withSecondary_sampleFile.txt
extdata/._rna_1_1.fq.bz2
extdata/._rna_1_2.fq.bz2
extdata/._rna_2_1.fq.bz2
extdata/._rna_2_2.fq.bz2
extdata/._samples_bis_single.txt
extdata/._samples_chip_single.txt
extdata/._samples_mirna.txt
extdata/._samples_rna_paired.txt
extdata/._samples_rna_single.txt
extdata/NC_001422.1.fa
extdata/NC_001422.1.fa.Rbowtie/._bowtieIndex.1.ebwt
extdata/NC_001422.1.fa.Rbowtie/._bowtieIndex.2.ebwt
extdata/NC_001422.1.fa.Rbowtie/._bowtieIndex.3.ebwt
extdata/NC_001422.1.fa.Rbowtie/._bowtieIndex.4.ebwt
extdata/NC_001422.1.fa.Rbowtie/._bowtieIndex.rev.1.ebwt
extdata/NC_001422.1.fa.Rbowtie/._bowtieIndex.rev.2.ebwt
extdata/NC_001422.1.fa.Rbowtie/bowtieIndex.1.ebwt
extdata/NC_001422.1.fa.Rbowtie/bowtieIndex.2.ebwt
extdata/NC_001422.1.fa.Rbowtie/bowtieIndex.3.ebwt
extdata/NC_001422.1.fa.Rbowtie/bowtieIndex.4.ebwt
extdata/NC_001422.1.fa.Rbowtie/bowtieIndex.rev.1.ebwt
extdata/NC_001422.1.fa.Rbowtie/bowtieIndex.rev.2.ebwt
extdata/NC_001422.1.fa.Rbowtie/ref_md5Sum.txt
extdata/NC_001422.1.fa.fai
extdata/NC_001422.1.fa.md5
extdata/auxiliaries.txt
extdata/bis_1_1.fa.bz2
extdata/chip_1_1.fq.bz2
extdata/chip_1_1_ca65174b9c7.bam
extdata/chip_1_1_ca65174b9c7.bam.bai
extdata/chip_1_1_ca65174b9c7.bam.txt
extdata/chip_1_1_d6c52b86d58.bam
extdata/chip_1_1_d6c52b86d58.bam.bai
extdata/chip_1_1_d6c52b86d58.bam.txt
extdata/chip_1_1_d6c7034d4fa.bam
extdata/chip_1_1_d6c7034d4fa.bam.bai
extdata/chip_1_1_d6c7034d4fa.bam.txt
extdata/chip_2_1.fq.bz2
extdata/chip_2_1_ca64650e198.bam
extdata/chip_2_1_ca64650e198.bam.bai
extdata/chip_2_1_ca64650e198.bam.txt
extdata/chip_2_1_d6c1c8aa2a3.bam
extdata/chip_2_1_d6c1c8aa2a3.bam.bai
extdata/chip_2_1_d6c1c8aa2a3.bam.txt
extdata/chip_2_1_d6c4a12d6d5.bam
extdata/chip_2_1_d6c4a12d6d5.bam.bai
extdata/chip_2_1_d6c4a12d6d5.bam.txt
extdata/hg19sub.fa
extdata/hg19sub.fa.Rbowtie/._bowtieIndex.2.ebwt
extdata/hg19sub.fa.Rbowtie/bowtieIndex.1.ebwt
extdata/hg19sub.fa.Rbowtie/bowtieIndex.2.ebwt
extdata/hg19sub.fa.Rbowtie/bowtieIndex.3.ebwt
extdata/hg19sub.fa.Rbowtie/bowtieIndex.4.ebwt
extdata/hg19sub.fa.Rbowtie/bowtieIndex.rev.1.ebwt
extdata/hg19sub.fa.Rbowtie/bowtieIndex.rev.2.ebwt
extdata/hg19sub.fa.Rbowtie/ref_md5Sum.txt
extdata/hg19sub.fa.fai
extdata/hg19sub.fa.md5
extdata/hg19sub_annotation.gtf
extdata/hg19sub_snp.txt
extdata/mirbaseXX_qsr.gff3
extdata/mirna_1.fa
extdata/phiX_paired_withSecondary.bam
extdata/phiX_paired_withSecondary.bam.bai
extdata/phiX_paired_withSecondary_sampleFile.txt
extdata/rna_1_1.fq.bz2
extdata/rna_1_2.fq.bz2
extdata/rna_2_1.fq.bz2
extdata/rna_2_2.fq.bz2
extdata/samples_bis_single.txt
extdata/samples_chip_single.txt
extdata/samples_mirna.txt
extdata/samples_rna_paired.txt
extdata/samples_rna_single.txt
fjComm-package.Rd
fjComm.Rproj
man/adda.Rd
man/fjComm-package.Rd
man/hello.Rd
man/rcpp_hello_world.Rd
src/RcppExports.cpp
src/_bk/._common_op.cpp
src/_bk/._common_op.h
src/_bk/._kcnt_bit.cpp
src/_bk/common_op.cpp
src/_bk/common_op.h
src/_bk/kcnt_bit.cpp
src/_testCpp.cpp
src/basic.cpp
src/chrScore.cpp
src/k_match_PWM.cpp
src/kcnt.cpp
src/kcnt_bit.cpp
src/kcnt_win.cpp
src/seed_to_pfm.cpp
src/sequenceOp.cpp
