linkages: LINKAGES main function

Description Usage Arguments Value Author(s)

View source: R/linkages.R

Description

Main function for running all LINKAGES subroutines

Usage

1
linkages(linkages.input, outdir, restart = NULL, linkages.restart = NULL)

Arguments

iplot

PEcAn settings object

nyear

number of years

nspec

number of species

fc

field capacity

dry

wilting point

bgs

beginning of growing season

egs

end of growing season

max.ind

maximum number of indiviuals allowed to grow in a plot

plat

latitude

temp.mat

monthly temperature matrix (nyear x 12)

precip.mat

monthly precipitation matrix (nyear x 12)

spp.params

species parameter matrix

switch.mat

species switches matrix

fdat

underground parameter matrix

clat

climate correction factor matrix

basesc

initial humus weight

basesn

initial N in soil

Value

year vector of years

ag.biomass above ground biomass in kgC/m2

total.soil.carbon soil organic matter + leaf litter in kgC/m2

leaf.litter leaf litter in kgC/m2

ag.npp above ground net primary production in kgC/m2/second

hetero.resp heterotrophic respiration in kgC/m2/second

nee net ecosystem exchange in kgC/m2/second

et annual evapotransipiration kgC/m2/s

agb.pft = agb.pft above ground biomass by plant functional type (species in LINKAGES)

f.comp = f.comp fractional composition (sums to 1 each year)

ntrees.birth=ntrees.birth number of trees born of each species each year

ntrees.kill = ntrees.kill number of trees killed of each species each year

tstem=tstem stem density

tab=tab total aboveground biomass without unit conversion

fl=fl total leaf litter without unit conversion

totl=totl leaf litter nitrogen

tnap=tnap total net above ground production without unit conversion

avln=avln available nitrogen

cn=cn carbon to nitrogen ratio

sco2c=sco2c soil repiration without unit conversion

som=som soil organic matter

bar=bar biomass by species without unit conversion

aet.save=aet.save annual evapotranspiration without unit conversion

nogro.save=nogro.save matrix of trees not growing each year

dbh.save=dbh.save matrix of dbh increment of trees each year

iage.save=iage.save matrix of age of each tree each year

Author(s)

Ann Raiho


araiho/linkages_package documentation built on Oct. 31, 2018, 8:23 p.m.