circos_plot: Creates a circos plot from the list of ligands and receptors

In arc85/celltalker: Analysis of cell-cell communication from single-cell RNAseq data

Creates a circos plot from the list of ligands and receptors

Description

Creates a circos plot from the list of ligands and receptors

Usage

circos_plot(
  ligand_receptor_frame,
  cell_group_colors,
  ligand_color = "blue",
  receptor_color = "red",
  cex_outer = 0.5,
  cex_inner = 0.4
)

Arguments

ligand_receptor_frame	Resulting tibble (usually filtered in some way) from the celltalk function.
cell_group_colors	Colors used for the groups of cells in the outer track of the circos plot.
ligand_color	Color to use for ligands. Defaults to "blue".
receptor_color	Color to use for the receptors. Defaults to "red".
cex_outer	Size of the text for the cell groups in the outer layer of the circos plot. Default is 0.5.
cex_inner	Size of the text for the ligand and receptors in the inner layer of the circos plot. Default is 0.4.

Value

Generates a circos plot connecting ligands and receptors across cell types for a given sample group

arc85/celltalker documentation built on July 2, 2023, 2:07 p.m.