ramilowski_pairs: List of known ligands, receptors and their iteractions.
In arc85/celltalker: Analysis of cell-cell communication from single-cell RNAseq data
ramilowski_pairs R Documentation
List of known ligands, receptors and their iteractions.
Description
This is a curated list of ligands, receptors and their potential interactions.
The list is derived from a manuscript from Ramilowski et al. There are other
potential lists that could be used in place of or in addition to this list.
Notably, the CellPhoneDB (https://github.com/ventolab/CellphoneDB) package
has an extensively curated list including multiple receptor components.
Usage
ramilowski_pairs
Format
A data.frame with 2557 rows and 3 variables:
- ligand
expressed ligands, total of 708 unique ligands
- receptor
expressed receptors, total of 691 receptors
- pair
interaction between and ligand and receptor, total of 2557
unique interactions
Source
arc85/celltalker documentation built on July 2, 2023, 2:07 p.m.
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| ramilowski_pairs | R Documentation |
List of known ligands, receptors and their iteractions.
Description
This is a curated list of ligands, receptors and their potential interactions. The list is derived from a manuscript from Ramilowski et al. There are other potential lists that could be used in place of or in addition to this list. Notably, the CellPhoneDB (https://github.com/ventolab/CellphoneDB) package has an extensively curated list including multiple receptor components.
Usage
ramilowski_pairs
Format
A data.frame with 2557 rows and 3 variables:
- ligand
expressed ligands, total of 708 unique ligands
- receptor
expressed receptors, total of 691 receptors
- pair
interaction between and ligand and receptor, total of 2557 unique interactions
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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