Files in areyesq89/SummarizedBenchmark
Classes and methods for performing benchmark comparisons

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/AllClasses.R R/AllGenerics.R R/BDData-constructor.R R/BDData-show.R R/BDMethod-constructor.R R/BDMethod-show.R R/BDMethod-tidy.R R/BDMethodList-accessors.R R/BDMethodList-constructor.R R/BDMethodList-show.R R/BenchDesign-accessors.R R/BenchDesign-constructor.R R/BenchDesign-show.R R/DefaultMetrics.R R/PerformanceMetrics.R R/PlottingFunctions.R R/SummarizedBenckmark-accessors.R R/SummarizedBenckmark-constructor.R R/addMethod.R R/buildBench.R R/compareBenchDesigns.R R/data-quant.R R/data-soneson2016.R R/data-tdat.R R/dropMethod.R R/expandMethod.R R/modifyMethod.R R/printMethod.R R/printUpdateBench.R R/updateBench.R README.Rmd README.md

SummarizedBenchmark.Rproj

_pkgdown.yml

data/datalist

data/quantSB.rda

data/sb.RData

data/soneson2016.rda

data/tdat.rda

docs/articles/Appendix.html

docs/articles/CaseStudy-RNAseqQuantification.html

docs/articles/CaseStudy-RNAseqQuantification_files/figure-html/pcaPlot-1.png

docs/articles/CaseStudy-SingleCellSimulation.html

docs/articles/CaseStudy-SingleCellSimulation_files/figure-html/plot-performace-metrics-1.png

docs/articles/CaseStudy-SingleCellSimulation_files/figure-html/plot-sim-result-comparison-1.png

docs/articles/CaseStudy-SingleCellSimulation_files/figure-html/plot-sim-result-comparison-2.png

docs/articles/Feature-ErrorHandling.html

docs/articles/Feature-Iterative.html

docs/articles/Feature-Parallel.html

docs/articles/QuantificationBenchmark.html

docs/articles/QuantificationBenchmark_files/figure-html/pcaPlot-1.png

docs/articles/SingleCellBenchmark.html

docs/articles/SummarizedBenchmark-ClassDetails.html

docs/articles/SummarizedBenchmark-FullCaseStudy.html

docs/articles/SummarizedBenchmark-FullCaseStudy_files/figure-html/unnamed-chunk-13-1.png

docs/articles/SummarizedBenchmark-FullCaseStudy_files/figure-html/unnamed-chunk-14-1.png

docs/articles/SummarizedBenchmark-Introduction.html

docs/articles/SummarizedBenchmark.html

docs/articles/index.html

docs/articles/summarizedbenchmark-figure1.png

docs/articles/summarizedbenchmark-figure2.png

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/favicon.ico

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/BDData-class.html

docs/reference/BDData-set.html

docs/reference/BDData-setter.html

docs/reference/BDData-show.html

docs/reference/BDData.html

docs/reference/BDMethod-class.html

docs/reference/BDMethod-setter.html

docs/reference/BDMethod-show.html

docs/reference/BDMethod.html

docs/reference/BDMethodList-accessors.html

docs/reference/BDMethodList-class.html

docs/reference/BDMethodList-setter.html

docs/reference/BDMethodList-show.html

docs/reference/BDMethodList.html

docs/reference/BenchDesign-a.html

docs/reference/BenchDesign-accessors.html

docs/reference/BenchDesign-class.html

docs/reference/BenchDesign-constructor.html

docs/reference/BenchDesign-show.html

docs/reference/BenchDesign.html

docs/reference/BenchDesignaaa.html

docs/reference/SummarizedBenchmark-accessors.html

docs/reference/SummarizedBenchmark-class.html

docs/reference/SummarizedBenchmark.html

docs/reference/addMethod.html

docs/reference/addPerformanceMetric.html

docs/reference/allSB.html

docs/reference/assayNames-setter.html

docs/reference/availableMetrics.html

docs/reference/buildBench.html

docs/reference/compareBDData.html

docs/reference/compareBDMethod.html

docs/reference/compareBenchDesigns.html

docs/reference/dropMethod.html

docs/reference/estimateMetrics.html

docs/reference/expandMethod.html

docs/reference/figures/sbhex.png

docs/reference/groundTruths-setter.html

docs/reference/groundTruths.html

docs/reference/hashBDData.html

docs/reference/index.html

docs/reference/mcols-setter.html

docs/reference/modifyMethod.html

docs/reference/modmethod.html

docs/reference/performanceMetrics-setter.html

docs/reference/performanceMetrics.html

docs/reference/plotMethodsOverlap.html

docs/reference/plotROC.html

docs/reference/printMethod.html

docs/reference/sb.html

docs/reference/tdat.html

docs/reference/tidyBDMethod.html

docs/reference/tidyUpMetrics.html

docs/reference/updateBench.html

inst/CITATION

inst/NEWS.Rd

man/BDData-class.Rd man/BDData-setter.Rd man/BDData-show.Rd man/BDData.Rd man/BDMethod-class.Rd man/BDMethod-setter.Rd man/BDMethod-show.Rd man/BDMethod.Rd man/BDMethodList-class.Rd man/BDMethodList-setter.Rd man/BDMethodList-show.Rd man/BDMethodList.Rd man/BenchDesign-class.Rd man/BenchDesign-show.Rd man/BenchDesign.Rd man/SummarizedBenchmark-class.Rd man/SummarizedBenchmark.Rd man/addMethod.Rd man/addPerformanceMetric.Rd man/allSB.Rd man/assayNames-setter.Rd man/availableMetrics.Rd man/buildBench.Rd man/compareBDData.Rd man/compareBDMethod.Rd man/compareBenchDesigns.Rd man/dropMethod.Rd man/estimateMetrics.Rd man/expandMethod.Rd

man/figures/sbhex.png

vignettes/library.bib

vignettes/summarizedbenchmark-figure1.png

vignettes/summarizedbenchmark-figure2.png

areyesq89/SummarizedBenchmark documentation built on Sept. 2, 2021, 4:15 p.m.

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areyesq89/SummarizedBenchmark
Classes and methods for performing benchmark comparisons

Files in areyesq89/SummarizedBenchmark
Classes and methods for performing benchmark comparisons

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areyesq89/SummarizedBenchmark Classes and methods for performing benchmark comparisons

Files in areyesq89/SummarizedBenchmark Classes and methods for performing benchmark comparisons

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areyesq89/SummarizedBenchmark
Classes and methods for performing benchmark comparisons

Files in areyesq89/SummarizedBenchmark
Classes and methods for performing benchmark comparisons