Man pages for areyesq89/SummarizedBenchmark
Classes and methods for performing benchmark comparisons
| addMethod | Add method to BenchDesign object |
| addPerformanceMetric | Add performance metric to SummarizedBenchmark object |
| allSB | SummarizedBenchmark object of isoform quantification results |
| assayNames-setter | Set assay names in SummarizedBenchmark object |
| availableMetrics | List pre-defined metrics for SummarizedBenchmark objects |
| BDData | Create a new BDData object |
| BDData-class | BDData class |
| BDData-setter | Set data in BenchDesign object |
| BDData-show | Show BDData object |
| BDMethod | Create a new BDMethod object |
| BDMethod-class | BDMethod class |
| BDMethodList | Create a new BDMethodList object |
| BDMethodList-class | BDMethodList class |
| BDMethodList-setter | Set method list in BenchDesign object |
| BDMethodList-show | Show BDMethodList object |
| BDMethod-setter | Set method in list or BenchDesign object |
| BDMethod-show | Show BDMethod object |
| BenchDesign | Create a new BenchDesign object |
| BenchDesign-class | BenchDesign class |
| BenchDesign-show | Show BenchDesign object |
| buildBench | Execute BenchDesign |
| compareBDData | Compare BDData objects |
| compareBDMethod | Compare BDMethod objects |
| compareBenchDesigns | Compare BenchDesign objects |
| dropMethod | Remove method from BenchDesign object |
| estimateMetrics | Estimate performance metrics in SummarizedBenchmark object |
| expandMethod | Expand method in BenchDesign object |
| groundTruths | Get ground truths in SummarizedBenchmark object |
| groundTruths-setter | Set ground truths in SummarizedBenchmark object |
| hashBDData | Hash data in BDData object |
| mcols-setter | Set meta data columns in SummarizedBenchmark object |
| modifyMethod | Modify method in BenchDesign object |
| modmethod | Modify BenchDesign Method |
| performanceMetrics | Get performance metrics in SummarizedBenchmark object |
| performanceMetrics-setter | Set performance metrics in SummarizedBenchmark object |
| plotMethodsOverlap | Plot UpSetR for SummarizedBenchmark object |
| plotROC | Plot ROC curve for SummarizedBenchmark object |
| printMethod | Pretty print methods in a BenchDesign object |
| sb | SummarizedBenchmark example |
| SummarizedBenchmark | Create a new SummarizedBenchmark object |
| SummarizedBenchmark-class | SummarizedBenchmark class |
| tdat | Example data.frame containing results for 50 two-sample... |
| tidyBDMethod | Tidy BDMethod Data |
| tidyUpMetrics | Tidy up performance metrics in SummarizedBenchmark object |
| updateBench | Check/Update SummarizedBenchmark |
