OP_testing: Generate Open Pollinated Families
In arfesta/SimBreeder: Forward population breeding simulator

Description Usage Arguments Examples

View source: R/OP_testing.R

This function simulates the creation of an Open Pollinated design and can make selections of which Parents perform the best

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OP_testing(map.info, parent.info, parent.phenos, parents.TGV, num.select,
  cross.prog = 1, dom.coeff, A, a, h2, E.var = NULL, run.parallel = F,
  n.cores = NULL)

`map.info`	Object returned from create_genetic_map()
`parent.info`	Object returned from create_parents()
`parent.phenos`	Object returned from sim_parents_phenos()
`parents.TGV`	Object returned from calc_parents_TGV()
`num.select`	The number of parents to select from the OP cross design
`cross.prog`	The number of crosses to be made between each founder parent
`dom.coeff`	The dominance cofficient used in estimating genetic values
`A`	The value assigned to the major allele
`a`	The value assigned to the minor allele
`h2`	Heritability to be used in estimating phenotypes
`run.parallel`	logical. Set TRUE to run in parallel.
`n.cores`	The number of cores which will be used if ran in parallel

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op.families <- OP_testing( map.info = the.map, parent.info = the.parents, parent.phenos = parent.PHENOS,
parents.TGV = parent.TGV, cross.prog = 1, num.select = 64, dom.coeff = 1, A = 1, a = -100, h2 = .3, 
run.parallel = T,n.cores = 3)