calc_progeny_TGV: Cacluate Progeny Total Genetic Value

In arfesta/SimBreeder: Forward population breeding simulator

Description

This function esimates the total genetic value of parents produced from the create_progeny function

Usage

calc_progeny_TGV(prog.info, map.info, cross.design, A, a, dom.coeff, save = F,
  prefix = NULL)

Arguments

prog.info	The object that is returned from the make_crosses()
map.info	The object returned from create_map()
cross.design	Object returned from create_cross_design()
A	Value assigned to the Major SNPQTL allele
a	Value assigned to the Minor SNPQTL allele
dom.coeff	The dominance coeffcient used for SNPQTLs
save	logical. Saves the output of genetic map (Default: FALSE)
prefix	Name prefix to add to ouptut if save = TRUE. Default does not write output
usesnpeffect	logical. Set to TRUE if specificying user provided snp effects. Default: FALSE
snp.effects	The vector of SNP effects to use. Only use if usesnpeffect = TRUE.

Examples

progeny1.TGV <- calc_progeny_TGV(prog.info = progeny1, map.info = the.map, crossdesign = cross.file,
A = 1, a = -100, dom.coeff = 1)

arfesta/SimBreeder documentation built on Dec. 19, 2021, 4:37 a.m.