posexp: Filter lncRNA dataset based on positive expression in a...
In aritronath/LEXI: LEXI: lncRNA expression imputation
Description
Usage
Arguments
Value
Examples
Description
Function to return lncRNA expression subset containing lncRNAs that are expressed in a specific percentage of samples
Usage
1
posexp(train_lnc, cutoff = 75, threshold = 1)
Arguments
train_lnc
a numeric matrix with lncRNA expression data
cutoff
percentage of samples in which the lncRNA should be expressed
threshold
the numeric threshold that defines whether the lncRNA is expressed or not. Defaults to 1 (for RPKM or FPKM)
Value
filtered lncRNA expression matrix
Examples
1
posexp(train_lnc, cutoff=75, threshold=1)
aritronath/LEXI documentation built on May 10, 2019, 1:27 p.m.
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Description Usage Arguments Value Examples
Description
Function to return lncRNA expression subset containing lncRNAs that are expressed in a specific percentage of samples
Usage
1 | posexp(train_lnc, cutoff = 75, threshold = 1)
|
Arguments
train_lnc |
a numeric matrix with lncRNA expression data |
cutoff |
percentage of samples in which the lncRNA should be expressed |
threshold |
the numeric threshold that defines whether the lncRNA is expressed or not. Defaults to 1 (for RPKM or FPKM) |
Value
filtered lncRNA expression matrix
Examples
1 | posexp(train_lnc, cutoff=75, threshold=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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