API for arlston/MeTPeak
A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data

Global functions
MeTPeak Man page Man page
MeTPeak-package Man page
bed2grangeslist Source code
betabinomial.hmm Source code
betabinomial.lh Source code
betabinomial.vit Source code
diff.call.module Source code
divide.anno.into.batches Source code
divide.anno.into.batches.small Source code
get.bam.chrs Source code
get.bam.read.length Source code
get.block.from.rna.peak Source code
get.check.points Source code
get.check.points.reads.count Source code
get.gene.anno Source code
get.peak.from.loci Source code
get.peak.reads.count Source code
get.reads.count Source code
get.sample.id Source code
get.table.peak.result Source code
get.table.peak.result.diff Source code
help.comphmm_plus Source code
help.compvit Source code
help.digamma Source code
help.factorial Source code
help.initial Source code
help.initpar Source code
help.minorm Source code
help.obj_plus Source code
help.optcond Source code
help.postprob Source code
help.trigamma Source code
metpeak Source code
metpeak.process Source code
metpeak.process.diff Source code
metpeak.process1 Source code
metpeak.process2 Source code
metpeak.process3 Source code
peak.call.module Source code
peak.call.module.diff Source code
peak.call.module1 Source code
peak.call.module2 Source code
peak.call.module3 Source code
read.gtf Source code
remove.local.anomalities Source code
report.peak Source code
arlston/MeTPeak documentation built on May 10, 2017, 10:13 p.m.