A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data

Global functions | |
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MeTPeak | Man page Man page |

MeTPeak-package | Man page |

bed2grangeslist | Source code |

betabinomial.hmm | Source code |

betabinomial.lh | Source code |

betabinomial.vit | Source code |

diff.call.module | Source code |

divide.anno.into.batches | Source code |

divide.anno.into.batches.small | Source code |

get.bam.chrs | Source code |

get.bam.read.length | Source code |

get.block.from.rna.peak | Source code |

get.check.points | Source code |

get.check.points.reads.count | Source code |

get.gene.anno | Source code |

get.peak.from.loci | Source code |

get.peak.reads.count | Source code |

get.reads.count | Source code |

get.sample.id | Source code |

get.table.peak.result | Source code |

get.table.peak.result.diff | Source code |

help.comphmm_plus | Source code |

help.compvit | Source code |

help.digamma | Source code |

help.factorial | Source code |

help.initial | Source code |

help.initpar | Source code |

help.minorm | Source code |

help.obj_plus | Source code |

help.optcond | Source code |

help.postprob | Source code |

help.trigamma | Source code |

metpeak | Source code |

metpeak.process | Source code |

metpeak.process.diff | Source code |

metpeak.process1 | Source code |

metpeak.process2 | Source code |

metpeak.process3 | Source code |

peak.call.module | Source code |

peak.call.module.diff | Source code |

peak.call.module1 | Source code |

peak.call.module2 | Source code |

peak.call.module3 | Source code |

read.gtf | Source code |

remove.local.anomalities | Source code |

report.peak | Source code |

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