MeTPeak: MeTPeak
In arlston/MeTPeak: A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data
Description
This is the main function of MeTPeak R-package, which supports the processing of affinity-based epitranscriptome sequencing data from MeRIP-Seq (m6A-Seq). The main features of the function includes:
1. Accept and statistically supports multiple biological replicates
2. Remove possible PCR artifacts and mapping ambiguity caused by multi-reads (reads that can be mapped to multiple genomic locations)
3. Automatic association of genes and the binding sites; Optionally output the intermediate results in Rdata format
The package features a highly simplied procedure with a single command accomplishing all its functions.
arlston/MeTPeak documentation built on May 10, 2019, 1:39 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
This is the main function of MeTPeak R-package, which supports the processing of affinity-based epitranscriptome sequencing data from MeRIP-Seq (m6A-Seq). The main features of the function includes:
1. Accept and statistically supports multiple biological replicates
2. Remove possible PCR artifacts and mapping ambiguity caused by multi-reads (reads that can be mapped to multiple genomic locations)
3. Automatic association of genes and the binding sites; Optionally output the intermediate results in Rdata format
The package features a highly simplied procedure with a single command accomplishing all its functions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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