API for armbrustlab/flowPhyto
Methods for Continuous Flow Cytometry

Global functions
CHANNEL.CLMNS Man page
CHANNEL.CLMNS.SM Man page
DBcon Source code
EVT.HEADER Man page
OPPtoFCSconversion Man page Source code
POP.DEF Man page
REPO.PATH Man page
SDScompUTC2POSIX Source code
SDSll2LL Source code
SDSpos2LL Source code
bWriteTable2 Source code
census Man page Source code
censusFile Man page Source code
checkJobCompletion Source code
classify Man page Source code
classifyFile Man page Source code
cleanSDS Source code
cleanbineSdsFiles Source code
cleanupLogs Man page Source code
clearOutputs Man page Source code
cmdArgsToVariables Source code
collapseDesc Source code Source code
combineCensusFiles Man page Source code
combinePopStatFiles Source code
combineSdsFiles Man page Source code
consensus Man page Source code
consensusFile Man page Source code
countFinished Source code
createBatchCommand Source code
createOutputPath Source code
createResamplingScheme Man page Source code
createStatsPath Source code
dms2decideg Source code
filter Man page Source code
filterFile Man page Source code
getCruiseFiles Man page Source code
getCruisePath Man page Source code
getDay Source code
getDirMaxFileNumber Source code
getFileNumber Man page Source code
getNextFiles Source code
getSDS Source code
getSDSlatlon Source code
getYear Source code
getYearDay Source code
joinSDS Man page Source code
loadCheck Source code
loadSDS Source code
loadStats Source code
makeMapColorGradient Source code
makeSDSlatlonDF Source code
nterpolateSDSLatLon Source code
nv Source code
pad Source code
parseArgString Source code
pipeline Man page Source code
plotCruiseStats Man page Source code
plotCytogram Man page Source code
plotLatLongMap Man page Source code
plotStatMap Man page Source code
plotStatsByPop Source code
prePlotLevel2 Source code
processRawData Source code
processStatistics Source code
queryStats Source code
queueLimitCheck Source code
quotize Source code
readConsensusFile Man page Source code
readPopDef Man page Source code
readSeaflow Man page Source code
removeFiles Source code
resampleRefactorReduction Source code
sampleFileCounts Source code
setFileNumber Source code
setYearDay Source code
streampressure2flowrate Source code
summarize Man page Source code
summarizeFile Man page Source code
tab2df Source code
unqCnstrntCheck Source code
validatePopDef Man page Source code
write.delim Source code
writeFCSheader Source code Source code
writeSeaflow Man page Source code
armbrustlab/flowPhyto documentation built on April 8, 2018, 3:29 a.m.