OPPtoFCSconversion: Convert OPP files into FCS 3.0.

In armbrustlab/flowPhyto: Methods for Continuous Flow Cytometry

Description

This is a function that convert binary Optimally Positioned Particle (OPP) file(s) into a flowFrame and then save the flowFrame as a Flow Cytometry Standard (FCS) file(s) (3.0 version).

Usage

OPPtoFCSconversion(opp.filelist, save.path = getCruisePath(opp.filelist),...)

Arguments

opp.filelist	a list of one or multiple OPP files.
save.path	path where fcs files will be saved.
...	additional arguments passed to the flowFrame function (see flowCore package for details

.FCS files

opp.filelist <- system.file("extdata","seaflow_cruise","2011_001", "1.evt.opp", package="flowPhyto")

y <- OPPtoFCSconversion(opp.filelist, save.path=NULL) y

armbrustlab/flowPhyto documentation built on May 10, 2019, 1:40 p.m.