Files in armbrustlab/manta
Microbial Assemblage Normalized Transcript Analysis
DESCRIPTION
LICENSE
NAMESPACE
R/Aggregate.R
R/Checks.R
R/CompBias.R
R/Counts.R
R/DGE.R
R/Manta.R
R/Normalize.R
R/Outliers.R
R/Plot.R
R/Pplacer.R
R/Samples.R
R/Seastar.R
R/Summary.R
R/Util.R
R/Weights.R
R/in2manta.R
README.md
inst/CITATION
inst/NEWS
inst/extdata/PapaGO-BLAST.results-diatoms.Rdata
inst/extdata/PapaGO-BLAST.results-diatoms.tab
inst/extdata/PapaGO-BWA.annot-diatoms.tab
inst/extdata/PapaGO-BWA.counts-diatoms.tab
inst/extdata/Pgranii-ambient.seastar
inst/extdata/Pgranii-plusFe.seastar
inst/extdata/pplacer/KOG0035/taxtable.db
inst/extdata/pplacer/KOG0119/taxtable.db
inst/extdata/pplacer/KOG0521/taxtable.db
inst/script/manta.R
man/cmdArgsToVariables.Rd
man/collapseRepliCounts.Rd
man/compbiasPlot.Rd
man/compbiasTest.Rd
man/generateWeights.Rd
man/in2manta.Rd
man/makeSampleDF.Rd
man/manta-class.Rd
man/manta.Rd
man/meta2counts.Rd
man/metataxa2subcounts.Rd
man/nf2nr.Rd
man/normfact2absTMM.Rd
man/nr.Rd
man/outliers.Rd
man/plot.manta.Rd
man/pplacer2manta.Rd
man/readSeastar.Rd
man/seastar2counts.Rd
man/summary.manta.Rd
vignettes/manta.Rnw
