nr: Print out all the normalization ratios for each subset in a...

Description Usage Arguments Value See Also Examples

View source: R/Normalize.R

Description

.

Usage

1
nr(obj, meta.lev, pair)

Arguments

obj

A manta object.

meta.lev

which taxinomic rank to use for subset normalization estimation.

pair

A named vector of conditions factors

Value

table of normalization ratios

See Also

manta, meta2manta

Examples

1
2
3
4
5
6
7
manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta")
load(manta.path)
x <- calcNormFactors(x)

conditions <- factor(x=1:2, labels=c('ambient','plusFe')); names(conditions) <- c('ref','obs')
			
nr(x, meta.lev='genus_sp', pair=conditions)			

armbrustlab/manta documentation built on Dec. 17, 2019, 12:06 a.m.