nr: Print out all the normalization ratios for each subset in a...
In armbrustlab/manta: Microbial Assemblage Normalized Transcript Analysis

Description Usage Arguments Value See Also Examples

1	nr(obj, meta.lev, pair)

`obj`	A manta object.
`meta.lev`	which taxinomic rank to use for subset normalization estimation.
`pair`	A named vector of conditions factors

table of normalization ratios

manta, meta2manta

manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta")
load(manta.path)
x <- calcNormFactors(x)

conditions <- factor(x=1:2, labels=c('ambient','plusFe')); names(conditions) <- c('ref','obs')
			
nr(x, meta.lev='genus_sp', pair=conditions)