Man pages for armbrustlab/manta
Microbial Assemblage Normalized Transcript Analysis
| cmdArgsToVariables | Create R variables from command line parameters |
| collapseRepliCounts | Collapse multiple technical replicate count columns into two... |
| compbiasPlot | plot the compositional bias for the sub-taxinomic rank |
| compbiasTest | compositional bias test |
| generateWeights | Generate Weights |
| in2manta | Convert a count or alignment table into a MANTA object |
| makeSampleDF | Make a Sample Dataframe for use in Initializing a MANTA... |
| manta | Create a MANTA object |
| manta-class | Microbial Assemblage Normalized Transcript Analysis - class |
| meta2counts | Convert a manta object's meta slot data into counts |
| metataxa2subcounts | create a new (sub) count table out of a subcomponent of the... |
| nf2nr | convert the normalization factors to a normalization line |
| normfact2absTMM | Convert a count or alignment table into a MANTA object |
| nr | Print out all the normalization ratios for each subset in a... |
| outliers | find the most significant or highest fold change outlier... |
| plot.manta | Plot a MAnTA object |
| pplacer2manta | convert a pplacer taxinomic placement repository to a MANTA... |
| readSeastar | Read SEAStAR output format |
| seastar2counts | Convert seastar output to count data |
| summary.manta | Summarize a MANTA object |
