Files in arnesmits/DEP
Differential Enrichment analysis of Proteomics data
DESCRIPTION
NAMESPACE
R/DEP.R
R/data.R
R/enrichR_functions.R
R/functions.R
R/gg_theme.R
R/plot_functions_QC.R
R/plot_functions_explore.R
R/plot_functions_frequencies.R
R/plot_functions_results.R
R/run_app_function.R
R/sysdata.rda
R/workflow_functions.R
R/wrapper_functions.R
R/zzz.R
README.md
data/DiUbi.rda
data/DiUbi_ExpDesign.rda
data/UbiLength.rda
data/UbiLength_ExpDesign.rda
inst/CITATION
inst/NEWS.Rd
inst/Report.Rmd
inst/shiny_apps/LFQ/app.R
inst/shiny_apps/TMT/app.R
man/DEP.Rd
man/DiUbi.Rd
man/DiUbi_ExpDesign.Rd
man/LFQ.Rd
man/TMT.Rd
man/UbiLength.Rd
man/UbiLength_ExpDesign.Rd
man/add_rejections.Rd
man/analyze_dep.Rd
man/filter_missval.Rd
man/filter_proteins.Rd
man/get_df_long.Rd
man/get_df_wide.Rd
man/get_prefix.Rd
man/get_results.Rd
man/get_suffix.Rd
man/import_IsobarQuant.Rd
man/import_MaxQuant.Rd
man/impute.Rd
man/make_se.Rd
man/make_se_parse.Rd
man/make_unique.Rd
man/manual_impute.Rd
man/meanSdPlot.Rd
man/normalize_vsn.Rd
man/plot_all.Rd
man/plot_cond.Rd
man/plot_cond_freq.Rd
man/plot_cond_overlap.Rd
man/plot_cor.Rd
man/plot_coverage.Rd
man/plot_detect.Rd
man/plot_dist.Rd
man/plot_frequency.Rd
man/plot_gsea.Rd
man/plot_heatmap.Rd
man/plot_imputation.Rd
man/plot_missval.Rd
man/plot_normalization.Rd
man/plot_numbers.Rd
man/plot_p_hist.Rd
man/plot_pca.Rd
man/plot_single.Rd
man/plot_volcano.Rd
man/process.Rd
man/report.Rd
man/run_app.Rd
man/se2msn.Rd
man/test_diff.Rd
man/test_gsea.Rd
man/theme_DEP1.Rd
man/theme_DEP2.Rd
tests/testthat.R
tests/testthat/test_1_unique_SE.R
tests/testthat/test_2_missVal_norm.R
tests/testthat/test_3_imputation.R
tests/testthat/test_4_differential_testing.R
tests/testthat/test_5_plot_functions_results.R
tests/testthat/test_6_plot_functions_QC.R
tests/testthat/test_7_plot_functions_frequencies.R
tests/testthat/test_8_plot_functions_explore.R
tests/testthat/test_9_workflows.R
tests/testthat/test_9a_wrapper.R
tests/testthat/test_shiny_app.R
vignettes/DEP.Rmd
vignettes/MissingValues.Rmd
