catch.r: Catch at Age Residuals

In arni-magnusson/bubbleplot: Bubble Plot, a Scatter Plot with Varying Symbol Sizes and Colors

Catch at Age Residuals

Description

Catch-at-age standardized log residuals from a fitted stock assessment model.

Usage

catch.r

Format

Data frame containing three columns:

Year	year
Age	age
Resid	standardized residual

Details

The values are from Table 8.6 in the ICES (2015) assessment of Icelandic saithe.

The standardized log residuals are based on observed and fitted catch at age:

log(Obs/Fit) / sigma

where sigma is the standard deviation of log(Obs/Fit).

Source

ICES (2015) Report of the North-Western Working Group (NWWG). ICES CM 2015/ACOM:07, p. 246.

See Also

catch.d and catch.m are the observed catch-at-age data.

bubbleplot-package gives an overview of the package.

Examples

# 1  Formula
bubbleplot(Catch~Age+Year, data=catch.d)
# Compare this plot with catch.m layout
print(catch.m)
bubbleplot(Catch~Age+Year, data=catch.d, rev=TRUE, las=TRUE)

# 2  Data frame
bubbleplot(catch.d)

# 3  Matrix or table
bubbleplot(catch.m)
catch.t <- xtabs(Catch~Year+Age, catch.d)
bubbleplot(catch.t)

# 4  Positive and negative values
bubbleplot(catch.r)
bubbleplot(Resid~Age+Year, catch.r, subset=Age %in% 4:9,
           rev=TRUE, xlim=c(3.5,9.5), cex=1.3)

arni-magnusson/bubbleplot documentation built on March 28, 2022, 12:11 a.m.