coord_to_arm: Genomic coordinate to chromosome arm

In arnijohnsen/arjtools: Collection of tools used in copy number variation analysis

Description

Returns chromosome arms for given chromosome and genomic position. Currently not implemented and returns NULL.

Usage

coord_to_arm(chromosome, position, assembly = "hg19", full = F)

Arguments

chromosome	Character or numeric vector, with chromosome of genomic coordinate
position	Numeric vector, with genomic position within chromosome
assembly	a string specifying which genome assembly version should be applied to determine chromosome arms. Allowed options are "hg38", hg19", "hg18", "hg17" and "hg16" (corresponding to the five latest human genome annotations in the UCSC genome browser).

Value

Character vector, with choromosome arm of given genomic coordinates

arnijohnsen/arjtools documentation built on May 10, 2019, 1:45 p.m.