plotSel: Plot Selectivity and Maturity

In arnima-github/scape: Statistical Catch-at-Age Plotting Environment

Plot Selectivity and Maturity

Description

Plot scape model predicted selectivity and observed maturity.

Usage

plotSel(model, together=FALSE, series=NULL, sex=NULL, axes=TRUE,
        legend="bottom", main="", xlab="", ylab="", cex.main=1.2,
        cex.legend=1, cex.lab=1, cex.axis=0.8, cex.strip=0.8,
        col.strip="gray95", strip=strip.custom(bg=col.strip), las=1,
        tck=0, tick.number=5, lty.grid=3, col.grid="gray", pch="m",
        cex.points=1, col.points="black", lty.lines=1, lwd.lines=4,
        col.lines=c("red","blue"), plot=TRUE, ...)

Arguments

model	fitted scape model.
together	whether to plot gears in one panel.
series	vector of strings indicating which gears or surveys to plot (all by default).
sex	string indicating which sex to plot (both by default).
axes	whether to plot axis values.
legend	legend location: "bottom", "left", "top", "right", or "" to suppress legend.
main	main title.
xlab	x-axis label.
ylab	y-axis label.
cex.main	size of main title.
cex.legend	size of legend text.
cex.lab	size of axis labels.
cex.axis	size of tick labels.
cex.strip	size of strip labels.
strip	logical flag (whether to plot strip labels), or a function passed to xyplot.
col.strip	color of strip labels.
las	orientation of tick labels: 0=parallel, 1=horizontal, 2=perpendicular, 3=vertical.
tck	tick mark length.
tick.number	number of tick marks.
lty.grid	line type of gridlines.
col.grid	color of gridlines.
pch	symbol for points.
cex.points	size of points.
col.points	color of points.
lty.lines	line type of main lines.
lwd.lines	line width of main lines.
col.lines	color of main lines.
plot	whether to draw plot.
...	passed to xyplot, panel.points, panel.lines, and panel.superpose.

Value

When plot=TRUE, a trellis plot is drawn and a data frame is returned, containing the data used for plotting. When plot=FALSE, a trellis object is returned.

Note

The Args function from the gdata package is recommended for reviewing the arguments, instead of args.

See Also

xyplot, panel.points, panel.lines, and panel.superpose are the underlying drawing functions.

plotCA, plotCL, plotIndex, and plotLA plot model fit and data.

plotB, plotN, and plotSel plot derived quantities.

scape-package gives an overview of the package.

Examples

plotSel(x.ling, xlab="Age", ylab="Selectivity and maturity")

plotSel(x.cod, together=TRUE, xlab="Age\n", ylab="Selectivity",
        pch=NA, col.lines=c("coral","navyblue"), strip=FALSE)

arnima-github/scape documentation built on Oct. 23, 2024, 9:59 a.m.