| batchCorrection | Batch correction for microarray data |
| biasCorrection | Linear bias correction for microarray data |
| borders | Get border intensity values from an AffyBatch object |
| calcCM | Calculate a binned correlation matrix |
| getBiasMetrics | Calculate bias metrics |
| getBiasMetrics2 | Calculate an extended set of bias metrics |
| getScanDate | Extract scan dates from CEL files |
| quantileNormalize | Quantile normalize a matrix |
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