GetIMPath: Quick image name finding

In asauvat/MetaxpR: MetaxpR

Quick image name finding

Description

Get MX image name(s) given its coordinates

Usage

GetIMPath(
  SERVER = "MDCStore",
  ID = "moldev",
  PWD = "moldev",
  PlateID,
  WellID,
  SiteID,
  TimePoint = 1,
  Z = 1,
  Unix.diff = c("//", "/media/")
)

Arguments

SERVER	the odbc connexion to MDCStore database
ID	the identifiant for connexion
PWD	the password for connexion
PlateID	the Plate Identifier
WellID	the Well Identifier
SiteID	a vector of 2 integers showing x and y site positions. If only one site present, x and y equal 0
TimePoint	From what timepoint the image name should be returned. Default is 1.
Z	The Z position of the image. Default is 1, value if no stacks is recorded. 0 for max projection, if recorded
Unix.diff	the string replacement for the mounting point of UNC image location, when accessed from linux machine

Value

A string array containing full image names

Author(s)

Allan Sauvat, [e-mail]

See Also

GetMDCInfo

Examples

#Not running
DB = GetMDCInfo(SERVER = 'MDCStore',ID = 'sa', PWD = '***') 
UniqueIDs=DB$MeasurementID[grep(paste0(1500:1515,collapse='|'),DB$PlateID)]) #Get uniquesIDs from plate 1500 to 1515
MyData = lapply(UniqueIDs,function(x)GetMDCData(SERVER='YODA-SERVER',MeasurementID=x)) #Create a list that contains cellular data from each plate

asauvat/MetaxpR documentation built on July 19, 2023, 1:04 p.m.