PrepareTorusFiles: PrepareTorusFiles
In aselewa/finemappeR: Performs finemapping using Torus and Susie
Description
Usage
Arguments
Value
Description
Prepares two files necessary for running torus: z-score file and annotations file
Usage
1
PrepareTorusFiles(cleaned_sumstats, bed_annotations)
Arguments
cleaned_sumstats
cleaned summary statistics from RunCleaner or other
bed_annotation
a directory containing annotations in bed format. The bed file must have three columns: chr, start, end. Chromosomes should be numeric (no "chr")
and should be in hg19/b37 format. You will get wrong results if you use hg38 or other (reference panel is hg19).
Value
NULL (results are written to disk in ./.temp)
aselewa/finemappeR documentation built on Jan. 25, 2021, 11 a.m.
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Description Usage Arguments Value
Description
Prepares two files necessary for running torus: z-score file and annotations file
Usage
1 | PrepareTorusFiles(cleaned_sumstats, bed_annotations)
|
Arguments
cleaned_sumstats |
cleaned summary statistics from RunCleaner or other |
bed_annotation |
a directory containing annotations in bed format. The bed file must have three columns: chr, start, end. Chromosomes should be numeric (no "chr") and should be in hg19/b37 format. You will get wrong results if you use hg38 or other (reference panel is hg19). |
Value
NULL (results are written to disk in ./.temp)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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