RunCleaner: RunCleaner
In aselewa/finemappeR: Performs finemapping using Torus and Susie
Description
Usage
Arguments
Value
Description
Cleans GWAS summary statistics and adds metadata
Usage
1
RunCleaner(sumstats, ColsToKeep, bigSNP)
Arguments
sumstats
a tibble or data frame containing raw summary statistics. Coordinates should be hg39/b37; the pipeline does not support hg38.
ColsToKeep
character vector of the following columns: chr, position, allele1, allele2, beta, se, unique id, pvalue
Value
Cleaned summary statistics + LD block of every SNP, as well as its index in the reference panel of genotypes
aselewa/finemappeR documentation built on Jan. 25, 2021, 11 a.m.
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Description Usage Arguments Value
Description
Cleans GWAS summary statistics and adds metadata
Usage
1 | RunCleaner(sumstats, ColsToKeep, bigSNP)
|
Arguments
sumstats |
a tibble or data frame containing raw summary statistics. Coordinates should be hg39/b37; the pipeline does not support hg38. |
ColsToKeep |
character vector of the following columns: chr, position, allele1, allele2, beta, se, unique id, pvalue |
Value
Cleaned summary statistics + LD block of every SNP, as well as its index in the reference panel of genotypes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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