Files in ashiklom/fortebaseline

Forest Resilience and Threshold Experiment (FoRTE) ED2 baseline runs source code and manuscript

CONDUCT.md CONTRIBUTING.md LICENSE.md R/bety.R R/ed-default-params.R R/fvector.R R/pecan-ed2.R R/pecan-functions.R R/pecan_meta_analysis.R R/pft.R R/read-i-cohort.R R/read-ie-files.R R/read_configxml.R R/retrieved-paths.R R/run-ed.R R/sensitivity_analysis.R R/submodel-rtm-2s.R R/submodel-rtm-ms.R R/submodel-rtm.R R/top-n-sensitivity-plot.R R/umbs-soil.R R/utils.R R/vars-i.R R/vars-m.R R/write-ed2-xml.R README.md analysis/drake.R analysis/drake/00-globals.R analysis/drake/00-helpers.R analysis/drake/case-metadata.R analysis/drake/download-files.R analysis/drake/other.R analysis/drake/overall-uncertainty.R analysis/drake/pft-composition-plots.R analysis/drake/sensitivity-analysis.R analysis/drake/specific-parameters.R analysis/drake/structure-results.R analysis/drake/superlatives.R analysis/drake/trait-distribution.R analysis/paper/chunks.Rmd analysis/paper/ed-notes.Rmd analysis/paper/exploratory.Rmd analysis/paper/notes-chris-jeff.md analysis/paper/paper.Rmd analysis/paper/parameters.Rmd analysis/paper/submodel-rtm.Rmd analysis/paper/supplementary-figures.Rmd analysis/scratch/download_ed_ensemble.R analysis/scratch/ed-inits.R analysis/scratch/ed-tests-init.R analysis/scratch/ed-tests-params.R analysis/scratch/ed-tests-structure.R analysis/scratch/exploratory.R analysis/scratch/helpers.R analysis/scratch/misc.R analysis/scratch/old-drake.R analysis/scratch/param-subsets.R analysis/scratch/plot_monthly.R analysis/scratch/plot_pecan_output.R analysis/scratch/plot_trait_data.R analysis/scratch/presentation.R analysis/scratch/prior-default.R analysis/scratch/r-submodels/multi-scatter.R analysis/scratch/read_10year_ensemble.R analysis/scratch/read_ed_ensemble.R analysis/scratch/read_pecan_output.R analysis/scratch/site-means.R analysis/scratch/soil.R analysis/scratch/submit_ed_runs.R analysis/scratch/test_ed_cases.R analysis/scratch/try-data.R analysis/scratch/umbs-data.R analysis/scratch/why-low-gpp.R analysis/scratch/why-pine-sla.R analysis/scripts/add_try_data.R analysis/scripts/create-ed-cases.R analysis/scripts/custom_met.R analysis/scripts/draw-params.R analysis/scripts/fit_spec_prior.R analysis/scripts/obstime_db_file.R analysis/scripts/param-sensitivities.R analysis/scripts/parameter-ranges.R analysis/scripts/read-o-files.R analysis/scripts/read_ed_params.R analysis/scripts/soil-moisture.R analysis/scripts/structure-default.R analysis/scripts/structure-mean-median.R analysis/scripts/test-ed-run.R analysis/scripts/update_bety.R analysis/setup/README.md analysis/setup/add_pfts.R analysis/templates/template.Rmd man-roxygen/con.R man/arrhenius.scaling.Rd man/as_pft_list.Rd man/beta0.Rd man/bety.Rd man/bety_tables.Rd man/convert.samples.ED.Rd man/draw_traits.Rd man/ed2in_common.Rd man/ed_default_params.Rd man/ed_input_dir.Rd man/fst_cohort.Rd man/fvector.Rd man/get_ids.Rd man/get_pft_ids.Rd man/gfunction.Rd man/integrate_light.Rd man/listToXml.Rd man/load_local.Rd man/ms_tau_diffuse.Rd man/mu_bar.Rd man/multi_scatter.Rd man/pb_along.Rd man/pbn.Rd man/pecan_ma_pft.Rd man/pfts.Rd man/phi1_f.Rd man/qdate.Rd man/read_configxml.Rd man/read_e_file.Rd man/read_efile_dir.Rd man/read_i_cohort.Rd man/read_o_file.Rd man/run_ed.Rd man/run_ed_maybe.Rd man/sensitivity_analysis.Rd man/set_pft.Rd man/single_scatter_albedo.Rd man/tail_ed_output.Rd man/tau_direct.Rd man/tidy_posterior.Rd man/top_n_sensitivity_plot.Rd man/try_numeric.Rd man/ts_mubar_star.Rd man/ts_tau_diffuse.Rd man/two_stream.Rd man/umbs_soil.Rd man/with_prog.Rd man/write.config.xml.ED2.Rd man/write_ed2_xml.Rd renv/activate.R