getVariantInfoFromExACAPI: Batch Call to the Broad Institue's ExAC project API to get...
In ashishjain1988/VCFAnnotator-Tempus: VCFAnnotatorTempus

Description Usage Arguments Value Author(s) Examples

View source: R/batchExACCall.R

This function make a batch call to the Broad Institue's ExAC project API to retreive the annotation information of variants.

1	getVariantInfoFromExACAPI(codeVector)

codeVector

Character vector of codes consists of the variant information in a format ("CHROMOSOME-POSITION-REFERENCE-VARIANT") required for Broad Institue's ExAC project API.

The output is a list object containing the variant annotation information from the Broad Institute's ExAC Project for each variant supplied.

Ashish Jain

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library(VCFAnnotatorTempus)
postVariantJson <- getVariantInfoFromExACAPI(c("14-21853913-T-C","14-21854139-A-G","22-46615746-A-G"))
print(postVariantJson[["14-21853913-T-C"]]$variant$allele_freq)