| generate.data | Generates two data sets to be registered |
| gpnlreg | Registers two data sets using Gaussian process nonrigid... |
| gpnlreg.apply.transformation | Applies transformation parameters to the moving data set |
| gpnlreg.estim.def | Locally estimates Matern and rigid transformation parameters... |
| gpnlreg.krig.local.pars | Takes locally estimated transformation parameters and fits... |
| gpnlreg.load | Wrapper for 'load.data' |
| gpnlreg.predict | Use fitted models in 'fit.results' to predict at locations in... |
| gpnlreg.setup | Splits data into subsets using setup.pars |
| largeCliffs | Three dimensional coordinates in two data sets of a set of... |
| load.data | Load two delimited files from two character vectors paths and... |
| logLik.deformation.penalized | Compute the log likelihood function, which may include a... |
| parallel.fcn | Function for paralleled estimation of a Gaussian process... |
| plot.data | Quilt plot three column data frame |
| plot.data.3d | Plot three column data frame in 3D with the 'rgl' package |
| plot.data.subset | 3D plot window and subsamples |
| plot.param | Plots the locally estimated transformation parameters and... |
| plot.windows.i | Plots data and boundaries of window.i |
| process.residuals | Process residuals from registration |
| rigid.registration | Apply a rigid registration tot data2 to align with the... |
| rmpi.implementation | Local estimation implemented with the 'Rmpi' package |
| rotate2d | Rotates the xy coordinates of a data frame |
| rotate3d | Rotates the 3D coordinates of a data frame |
| serial.implementation | Local estimation implemented with a naive for-loop |
| smallCliffs | Three dimensional coordinates in two data sets of a set of... |
| split.data.overlap | Split the data into subsets based on inclusion in a grid box... |
| translate | Translates the 3D coordinates of a data frame |
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