gene2bed: Create a BED file containing the coding regions of genes

In askol-lurie/Bed2GeneRPackage: Annotate BED file with genes

Description

Create a BED file of coding exons for a user-specified set of genes. Padding can be added#'

Usage

gene2bed(genes, geneFile, prefix, outDir, pad = 0, rmChrM = TRUE)

Arguments

genes	List of genes for which coding exons should be output coding exons.
prefix	Prefix for output files (optional)
outDir	Output directory (optional)
pad	Amount of padding up and downstream of coding exon (in bp) (default = 0)
rmChrM	Indicates if mitochondrial genes should be output (TRUE/FALSE) (default is TRUE)
genefile	A file that contains one gene per line

Value

Null

Author(s)

Andrew Skol, [e-mail]

See Also

bed2gene

Examples

gene2bed(c("TP53","HNF4A"), prefix="MyGenes", pad=10, rmChrM=TRUE)

askol-lurie/Bed2GeneRPackage documentation built on Dec. 31, 2020, 7:52 p.m.