prune: Prune GPA-Tree model fit

In asthakhatiwada/GPATree: A package to implement the GPA-Tree method

Description

This function will prune the GPA-Tree model fit using the given cp value.

Usage

## S4 method for signature 'GPATree'
prune(object, cp = 0.001)

Arguments

object	An object of class GPATree.
cp	The cp parameter to be used for pruning. cp must be between 0 and 1.

Value

GPA-Tree model output.

Author(s)

Aastha Khatiwada

Examples

## Not run: 
library(GPATree)

# load GPATree example data
data(GPATreeExampleData)

#fitting the GPATree model
fit <- GPATree(GPATreeExampleData$gwasPval, GPATreeExampleData$annMat)

# pruning the GPATree model fit
pruned.fit <- prune(fit, cp = 0.005)

## End(Not run)

asthakhatiwada/GPATree documentation built on March 8, 2021, 5:29 a.m.