baseline_transform: Transform trial values relative to baseline

In atamalu/fluoR: A Data Manipulation and Analysis Package for Temporal Fluorescence Data

Description

'baseline_transform' transforms a fluoR dataframe into change from a specified baseline period

Usage

baseline_transform(dataframe, trials, baseline.times, type = "z_standard")

Arguments

dataframe	a fluoR-format dataframe
trials	trial numbers to transform
baseline.times	a range of values specifying a baseline period
type	type of transformation to use on dataframe input

Value

a dataframe of transformed values for the specified trials

Examples

### Format data frame
df <- format_data(GCaMP)

### Standardize variables relative to baseline using z-scores
baseline_transform(dataframe = df, trials = 1:5, baseline.times = c(-4,0),
type = 'z_standard')

atamalu/fluoR documentation built on Dec. 7, 2020, 4:48 a.m.