chromstaR-package: Combinatorial and differential chromatin state analysis for...
In ataudt/chromstaR: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
Description
This package implements functions for the combinatorial and differential analysis of ChIP-seq data. It was developed for histone modifications with a broad profile but is also suitable for the analysis of transcription factor binding data. A Hidden Markov Model with a mixture of Negative Binomials as emission densities is used to call peaks. Please refer to our manuscript at http://dx.doi.org/10.1101/038612 for a detailed description of the method.
Details
The main function of this package is Chromstar. For a detailed introduction type browseVignettes("chromstaR") and read the vignette. Here is an overview of all plotting functions.
Author(s)
Aaron Taudt, Maria Colome-Tatche, Matthias Heinig, Minh Anh Nguyen
ataudt/chromstaR documentation built on Dec. 26, 2021, 12:07 a.m.
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Description
This package implements functions for the combinatorial and differential analysis of ChIP-seq data. It was developed for histone modifications with a broad profile but is also suitable for the analysis of transcription factor binding data. A Hidden Markov Model with a mixture of Negative Binomials as emission densities is used to call peaks. Please refer to our manuscript at http://dx.doi.org/10.1101/038612 for a detailed description of the method.
Details
The main function of this package is Chromstar. For a detailed introduction type browseVignettes("chromstaR") and read the vignette. Here is an overview of all plotting functions.
Author(s)
Aaron Taudt, Maria Colome-Tatche, Matthias Heinig, Minh Anh Nguyen
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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