heatmapCountCorrelation: Read count correlation heatmap
In ataudt/chromstaR: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
Description
Usage
Arguments
Value
See Also
Examples
Description
Heatmap of read count correlations (see cor).
Usage
1
heatmapCountCorrelation(model, cluster = TRUE)
Arguments
model
A multiHMM or combinedMultiHMM object or file that contains such an object.
cluster
Logical indicating whether or not to cluster the heatmap.
Value
A ggplot object.
See Also
Examples
1
2
3
4
5
6
## Get an example multiHMM ##
file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
package="chromstaR")
model <- get(load(file))
## Plot count correlations as heatmap
heatmapCountCorrelation(model)
ataudt/chromstaR documentation built on Dec. 26, 2021, 12:07 a.m.
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Description Usage Arguments Value See Also Examples
Description
Heatmap of read count correlations (see cor).
Usage
1 | heatmapCountCorrelation(model, cluster = TRUE)
|
Arguments
model |
A |
cluster |
Logical indicating whether or not to cluster the heatmap. |
Value
A ggplot object.
See Also
Examples
1 2 3 4 5 6 | ## Get an example multiHMM ##
file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
package="chromstaR")
model <- get(load(file))
## Plot count correlations as heatmap
heatmapCountCorrelation(model)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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