Files in ataudt/popmeth
Imputation-guided re-construction of complete methylomes from WGBS data
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/RcppExports.R
R/addColumns.R
R/binMethylome.R
R/callMethylation.R
R/checkUserInput.R
R/collapseBins.R
R/correlation.R
R/distributions.R
R/documented_objects.R
R/export.R
R/extractCytosinesFromFASTA.R
R/getDistinctColors.R
R/getPosteriors.R
R/global.R
R/importData.R
R/inflateMethylome.R
R/loadFromFiles.R
R/methimpute-package.R
R/parameterScan.R
R/permute.R
R/plotting.R
R/printMethods.R
R/timedMessage.R
README.md
data/arabidopsis_TEs.RData
data/arabidopsis_chromosomes.RData
data/arabidopsis_genes.RData
data/arabidopsis_toydata.RData
inst/CITATION
inst/extdata/arabidopsis_BSMAP.txt
inst/extdata/arabidopsis_bismark.txt
inst/extdata/arabidopsis_bsseeker.txt.gz
inst/extdata/arabidopsis_methylpy.txt
inst/extdata/arabidopsis_rene.txt
inst/extdata/arabidopsis_sequence.fa.gz
man/arabidopsis_TEs.Rd
man/arabidopsis_chromosomes.Rd
man/arabidopsis_genes.Rd
man/arabidopsis_toydata.Rd
man/binning.Rd
man/binomialTestMethylation.Rd
man/callMethylation.Rd
man/callMethylationSeparate.Rd
man/collapseBins.Rd
man/distanceCorrelation.Rd
man/estimateTransDist.Rd
man/exportMethylome.Rd
man/extractCytosinesFromFASTA.Rd
man/getDistinctColors.Rd
man/getPosteriors.Rd
man/getStateColors.Rd
man/import.Rd
man/importRene.Rd
man/inflateMethylome.Rd
man/loadFromFiles.Rd
man/methimpute-objects.Rd
man/methimpute-package.Rd
man/methimputeBinomialHMM.Rd
man/methimputeData.Rd
man/parameterScan.Rd
man/plotting.Rd
man/print.methimputeBinomialHMM.Rd
man/transCoord.Rd
methimpute.Rproj
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/densities.cpp
src/densities.h
src/fitHMM.cpp
src/fitHMM_context.cpp
src/hmm_context.cpp
src/hmm_context.h
src/methimpute_init.c
src/scalehmm.cpp
src/scalehmm.h
vignettes/methimpute.Rnw
vignettes/methimpute.pdf
