Man pages for ataudt/popmeth
Imputation-guided re-construction of complete methylomes from WGBS data

arabidopsis_chromosomesChromosome lengths for Arabidopsis
arabidopsis_genesGene coordinates for Arabidopsis (chr1)
arabidopsis_TEsTransposable element coordinates for Arabidopsis (chr1)
arabidopsis_toydataToy data for Arabidopsis (200.000bp of chr1)
binningMethimpute binning functions
binomialTestMethylationCall methylation status
callMethylationCall methylation status
callMethylationSeparateCall methylation status
collapseBinsCollapse consecutive bins
distanceCorrelationDistance correlation
estimateTransDist'transDist' parameter
exportMethylomeExport a methylome
extractCytosinesFromFASTAExtract cytosine coordinates
getDistinctColorsGet distinct colors
getPosteriorsGet original posteriors
getStateColorsGet state colors
importMethimpute data import
importReneImport a Rene methylation extractor file
inflateMethylomeInflate an imported methylation extractor file
loadFromFilesLoad 'methimpute' objects from file
methimputeBinomialHMMmethimputeBinomialHMM
methimputeDatamethimputeData
methimpute-objectsmethimpute objects
methimpute-packagemethIMPUTE: Imputation-guided methylation status calling for...
parameterScanPerform a parameter scan
plottingMethimpute plotting functions
print.methimputeBinomialHMMPrint model object
transCoordTransform genomic coordinates
ataudt/popmeth documentation built on June 14, 2018, 7:25 p.m.