methimputeBinomialHMM: methimputeBinomialHMM

Description Details Value See Also

Description

The methimputeBinomialHMM is a list() which contains various entries (see Value section). The main entry of this object is $data, which contains the methylation status calls and posterior values. See Details for a description of all columns.

Details

The $data entry in this object contains the following columns:

Value

A list() with the following entries:

convergenceInfo

A list() with information about the convergence of the model fitting procedure.

params

A list() with fitted and non-fitted model parameters.

params.initial

A list() with initial values for the model parameters.

data

A GRanges-class with cytosine positions and methylation status calls.

segments

The data entry where coordinates of consecutive cytosines with the same methylation status have been merged.

See Also

methimpute-objects


ataudt/popmeth documentation built on May 10, 2019, 2:07 p.m.